Truncated (N)-Methanocarba Nucleosides as Partial Agonists at Mouse and Human A3 Adenosine Receptors: Affinity Enhancement by N6-(2-Phenylethyl) Substitution

J Med Chem. 2020 Apr 23;63(8):4334-4348. doi: 10.1021/acs.jmedchem.0c00235. Epub 2020 Apr 9.

Abstract

Dopamine-derived N6-substituents, compared to N6-(2-phenylethyl), in truncated (N)-methanocarba (bicyclo[3.1.0]hexyl) adenosines favored high A3 adenosine receptor (AR) affinity/selectivity, e.g., C2-phenylethynyl analogue 15 (MRS7591, Ki = 10.9/17.8 nM, at human/mouse A3AR). 15 was a partial agonist in vitro (hA3AR, cAMP inhibition, 31% Emax; mA3AR, [35S]GTP-γ-S binding, 16% Emax) and in vivo and also antagonized hA3AR in vitro. Distal H-bonding substitutions of the N6-(2-phenylethyl) moiety particularly enhanced mA3AR affinity by polar interactions with the extracellular loops, predicted using docking and molecular dynamics simulation with newly constructed mA3AR and hA3AR homology models. These hybrid models were based on an inactive antagonist-bound hA1AR structure for the upper part of TM2 and an agonist-bound hA2AAR structure for the remaining TM portions. These species-independent A3AR-selective nucleosides are low efficacy partial agonists and novel, nuanced modulators of the A3AR, a drug target of growing interest.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, N.I.H., Intramural

MeSH terms

  • Adenosine A3 Receptor Agonists / chemistry*
  • Adenosine A3 Receptor Agonists / metabolism*
  • Adenosine A3 Receptor Agonists / pharmacology
  • Animals
  • Dose-Response Relationship, Drug
  • HEK293 Cells
  • Humans
  • Male
  • Mice
  • Mice, Inbred C57BL
  • Mice, Knockout
  • Nucleosides / chemistry*
  • Nucleosides / metabolism*
  • Nucleosides / pharmacology
  • Protein Binding / drug effects
  • Protein Binding / physiology
  • Protein Structure, Secondary
  • Receptor, Adenosine A3 / chemistry*
  • Receptor, Adenosine A3 / metabolism*

Substances

  • Adenosine A3 Receptor Agonists
  • Nucleosides
  • Receptor, Adenosine A3